Publications
1. Chong, K. H., Samarasinghe, S., & Kulasiri, D. (2015). Mathematical modelling of p53 basal dynamics and DNA damage
response. Mathematical Biosciences 259, 27-42, doi:http://dx.doi.org/10.1016/j.mbs.2014.10.010.
(selected to feature on globalmedicaldiscovery.com webpage at https://globalmedicaldiscovery.com/key-scientific-articles/mathematical-modelling-of-p53-
basal-dynamics-and-dna-damage-response/) Microscope replaced by algorithm in cancer research at Lincoln University 2015 News Archive
response. Mathematical Biosciences 259, 27-42, doi:http://dx.doi.org/10.1016/j.mbs.2014.10.010.
(selected to feature on globalmedicaldiscovery.com webpage at https://globalmedicaldiscovery.com/key-scientific-articles/mathematical-modelling-of-p53-
basal-dynamics-and-dna-damage-response/) Microscope replaced by algorithm in cancer research at Lincoln University 2015 News Archive
chong_et_al_p53_model_math_biosci_2015.ode | |
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chong_et_al_p53_model_math_biosci_2015_fig_6a.ode | |
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chong_et_al_p53_model_math_biosci_2015_fig_6b.ode | |
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chong_et_al_p53_model_math_biosci_2015_fig_6c.ode | |
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2. Chong, K.H., Samarasinghe, S., & Kulasiri, D. (2013). Mathematical modelling of p53 basal dynamics and DNA damage
response. In Piantodosi, J., Anderssen, R.S. and Boland J. (eds) MODSIM2013, 20th International Congress on Modelling and
Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2013, pp. 670-676. ISBN: 978-0-
9872143-3-1.
http://www.mssanz.org.au.previewdns.com/modsim2013/C2/chong.pdf
response. In Piantodosi, J., Anderssen, R.S. and Boland J. (eds) MODSIM2013, 20th International Congress on Modelling and
Simulation. Modelling and Simulation Society of Australia and New Zealand, December 2013, pp. 670-676. ISBN: 978-0-
9872143-3-1.
http://www.mssanz.org.au.previewdns.com/modsim2013/C2/chong.pdf
3. Chong, K.H., Samarasinghe, S., Kulasiri, D., & Zheng, J. (2015). Computational techniques in mathematical modelling of
biological switches. In Weber, T., McPhee, M.J. and Anderssen, R.S. (eds) MODSIM2015, 21st International Congress on Modelling
and Simulation (MODSIM 2015). Modelling and Simulation Society of Australia and New Zealand, December 2015, pp. 578-584.
ISBN: 978-0-9872143-5-5.
www.mssanz.org.au/modsim2015/C2/chong.pdf
biological switches. In Weber, T., McPhee, M.J. and Anderssen, R.S. (eds) MODSIM2015, 21st International Congress on Modelling
and Simulation (MODSIM 2015). Modelling and Simulation Society of Australia and New Zealand, December 2015, pp. 578-584.
ISBN: 978-0-9872143-5-5.
www.mssanz.org.au/modsim2015/C2/chong.pdf
4. Ranjan, B., Chong, K.H., & Zheng, J. (2018). Composite mathematical modeling of calcium signaling behind
neuronal cell death in Alzheimer’s disease. BMC Systems Biology (APBC 2018).
https://bmcsystbiol.biomedcentral.com/articles/10.1186/s12918-018-0529-2
neuronal cell death in Alzheimer’s disease. BMC Systems Biology (APBC 2018).
https://bmcsystbiol.biomedcentral.com/articles/10.1186/s12918-018-0529-2
5. Zhang, X., Chong, K.H., & Zheng, J. (2018). A Monte Carlo method for in silico modeling and visualization of
Waddington's epigenetic landscape with intermediate details.
bioRxiv. doi: https://doi.org/10.1101/310771
Zhang, X., Chong, K.H., Zhu, L. & Zheng, J. (2020). A Monte Carlo method for in silico modeling and visualization of
Waddington's epigenetic landscape with intermediate details. Biosystems.
click this link to the paper
Waddington's epigenetic landscape with intermediate details.
bioRxiv. doi: https://doi.org/10.1101/310771
Zhang, X., Chong, K.H., Zhu, L. & Zheng, J. (2020). A Monte Carlo method for in silico modeling and visualization of
Waddington's epigenetic landscape with intermediate details. Biosystems.
click this link to the paper
6. Chong, K.H., Zhang, X., & Zheng, J. (2018). Dynamical analysis of cellular ageing by modeling of gene regulatory
network based attractor landscape. PLoS ONE 13(6): e0197838. https://doi.org/10.1371/journal.pone.0197838
network based attractor landscape. PLoS ONE 13(6): e0197838. https://doi.org/10.1371/journal.pone.0197838
7. Chong, K. H., Samarasinghe, S., Kulasiri, D., & Zheng, J. (2019). Mathematical modelling the core regulatory mechanism of p53
protein that activates apoptotic switch. Journal of Theoretical Biology. https://doi. org/10.1016/j.jtbi.2018.11.1008
protein that activates apoptotic switch. Journal of Theoretical Biology. https://doi. org/10.1016/j.jtbi.2018.11.1008
8. Chong, K.H. (2021). Tutorial for XPP AUTO to draw bifurcation diagram from periodic oscillations. ResearchGate.net
DOI: 10.13140/RG.2.2.31454.97607
link to the XPP code
DOI: 10.13140/RG.2.2.31454.97607
link to the XPP code
9. Chong, K.H. (2023). Tutorial for XPP AUTO to draw bifurcation diagram from steady state. ResearchGate.net
DOI: 10.13140/RG.2.2.32572.41606
link to the XPP code
DOI: 10.13140/RG.2.2.32572.41606
link to the XPP code
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